kegg-pathways-completeness-tool
This tool estimates the completeness of KEGG pathway modules from the presence or absence of KEGG orthologues (KOs)
Topics
Details
- License:
- Apache-2.0
- Maturity:
- Mature
- Tool Type:
- command-line tool
- Programming Languages:
- Python, Shell
- Added:
- 7/17/2026
- Last Updated:
- 7/17/2026
Operations
Data Inputs & Outputs
Expression profile pathway mapping
Inputs
Outputs
Publications
Documentation
User manual
https://github.com/EBI-Metagenomics/kegg-pathways-completeness-tool/blob/master/docs/parse_hmmer_table.mdHow to Generate KO-Annotated Table
User manual
https://github.com/EBI-Metagenomics/kegg-pathways-completeness-tool/blob/master/docs/update_database.mdUpdate KEGG Modules Database