KiMoPack

KiMoPack performs kinetic modeling and global and target analysis of two-dimensional transient spectroscopic data to extract kinetic parameters and spectral components.


Key Features:

  • Python implementation: Implemented as a Python package for programmatic kinetic data analysis.
  • Data preprocessing and standard fitting: Provides preprocessing routines and global analysis techniques for standard fitting of spectroscopic datasets.
  • Complex (target) kinetic model fitting: Supports fitting of complex target kinetic models to transient spectroscopic data.
  • Multiexperiment analysis: Enables comparative analysis across multiple experiments and datasets.
  • Integrated 2D data processing and plotting: Combines preprocessing, fitting, and plotting for two-dimensional transient spectroscopic data.

Scientific Applications:

  • Chemical kinetics: Modeling and analysis of reaction mechanisms and kinetic rate constants from transient spectroscopy.
  • Biophysical studies: Investigation of dynamic processes in biological systems using time-resolved spectroscopic measurements.
  • Materials science: Analysis of transient phenomena and excited-state dynamics in novel materials.

Methodology:

Computational steps explicitly include preprocessing of spectroscopic datasets, global (standard) fitting, fitting of target kinetic models, multiexperiment analysis, and plotting of two-dimensional transient data.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
9/7/2022
Last Updated:
11/24/2024

Operations

Publications

Müller C, Pascher T, Eriksson A, Chabera P, Uhlig J. KiMoPack: A <tt>python</tt> Package for Kinetic Modeling of the Chemical Mechanism. The Journal of Physical Chemistry A. 2022;126(25):4087-4099. doi:10.1021/acs.jpca.2c00907. PMID:35700393. PMCID:PMC9251768.

PMID: 35700393
PMCID: PMC9251768
Funding: - Vetenskapsr?det: 2020-04995

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