KiMoPack
KiMoPack performs kinetic modeling and global and target analysis of two-dimensional transient spectroscopic data to extract kinetic parameters and spectral components.
Key Features:
- Python implementation: Implemented as a Python package for programmatic kinetic data analysis.
- Data preprocessing and standard fitting: Provides preprocessing routines and global analysis techniques for standard fitting of spectroscopic datasets.
- Complex (target) kinetic model fitting: Supports fitting of complex target kinetic models to transient spectroscopic data.
- Multiexperiment analysis: Enables comparative analysis across multiple experiments and datasets.
- Integrated 2D data processing and plotting: Combines preprocessing, fitting, and plotting for two-dimensional transient spectroscopic data.
Scientific Applications:
- Chemical kinetics: Modeling and analysis of reaction mechanisms and kinetic rate constants from transient spectroscopy.
- Biophysical studies: Investigation of dynamic processes in biological systems using time-resolved spectroscopic measurements.
- Materials science: Analysis of transient phenomena and excited-state dynamics in novel materials.
Methodology:
Computational steps explicitly include preprocessing of spectroscopic datasets, global (standard) fitting, fitting of target kinetic models, multiexperiment analysis, and plotting of two-dimensional transient data.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 9/7/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Müller C, Pascher T, Eriksson A, Chabera P, Uhlig J. KiMoPack: A <tt>python</tt> Package for Kinetic Modeling of the Chemical Mechanism. The Journal of Physical Chemistry A. 2022;126(25):4087-4099. doi:10.1021/acs.jpca.2c00907. PMID:35700393. PMCID:PMC9251768.
Documentation
General', 'Installation instructions
https://kimopack.readthedocs.io/en/latest/Downloads
- Downloads pagehttps://zenodo.org/record/7033129#.YxkTSGxBxPY