Klebsiella MALDI TypeR
Klebsiella MALDI TypeR identifies Klebsiella species and phylogroups from MALDI-TOF mass spectrometry data, enabling high-resolution discrimination of the Klebsiella pneumoniae complex (KpSC) and the Klebsiella oxytoca complex (KoSC).
Key Features:
- MALDI-TOF data analysis: Analyzes raw MALDI-TOF mass spectrometry data for taxonomic discrimination.
- Biomarker database: Uses a comprehensive database of biomarkers uniquely associated with Klebsiella species complexes and phylogroups.
- Species and phylogroup identification: Provides precise identification at both species-complex and phylogroup levels for KpSC and KoSC.
- Targeted high-resolution identification: Employs a targeted biomarker-based approach to improve resolution over conventional clinical microbiology methods.
Scientific Applications:
- Clinical microbiology: Supports accurate differentiation of Klebsiella species for clinical diagnostic and management purposes.
- Epidemiological studies: Enables investigation of the distribution and impact of Klebsiella species in healthcare settings.
- Infection control and antibiotic stewardship: Provides reliable species- and phylogroup-level identification to inform infection control measures and antibiotic stewardship.
Methodology:
Analyzes raw MALDI-TOF mass spectrometry data using a comprehensive biomarker database that associates specific peaks with Klebsiella species complexes and phylogroups, applying a targeted approach for high-resolution identification.
Topics
Details
- Tool Type:
- web application
- Added:
- 1/18/2021
- Last Updated:
- 3/18/2021
Operations
Publications
Bridel S, Watts SC, Judd LM, Harshegyi T, Passet V, Rodrigues C, Holt KE, Brisse S. <i>Klebsiella</i>MALDI TypeR: a web-based tool for<i>Klebsiella</i>identification based on MALDI-TOF mass spectrometry. Unknown Journal. 2020. doi:10.1101/2020.10.13.337162.