Knowledge4COVID-19

Knowledge4COVID-19 integrates and analyzes diverse biomedical data to construct a Knowledge Graph (KG) for discovering and predicting adverse drug effects arising from drug-drug interactions among COVID-19 treatments and medications for pre-existing conditions.


Key Features:

  • Knowledge Graph Construction: Constructs a Knowledge Graph using the RDF Mapping Language and declarative mapping rules to integrate data from sources including DrugBank and CORD-19.
  • Natural Language Processing (NLP): Applies NLP techniques to extract entities and predicates from scientific databases and literature for fine-grained descriptions of COVID-19 treatments and associated adverse events.
  • Adverse Drug Effect Discovery: Discovers and predicts drug-drug interactions and potential adverse effects among COVID-19 treatments and medications for comorbidities such as hypertension, diabetes, and asthma.

Scientific Applications:

  • Adverse interaction analysis: Enables discovery and prediction of drug-drug interactions and their associated adverse events for COVID-19 therapies.
  • Treatment regimen assessment: Supports analysis of interaction risks to inform treatment considerations for patients with comorbidities such as hypertension, diabetes, or asthma.

Methodology:

Constructs a KG using RDF Mapping Language with declarative mapping rules integrating sources such as DrugBank and CORD-19; employs NLP to extract entities and predicates; and applies computational techniques for interaction discovery and prediction.

Topics

Collections

Details

License:
Apache-2.0
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Mac, Linux, Windows
Programming Languages:
Python
Added:
12/29/2022
Last Updated:
12/29/2022

Operations

Publications

Sakor A, Jozashoori S, Niazmand E, Rivas A, Bougiatiotis K, Aisopos F, Iglesias E, Rohde PD, Padiya T, Krithara A, Paliouras G, Vidal M. Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments’ toxicities. Journal of Web Semantics. 2023;75:100760. doi:10.1016/j.websem.2022.100760. PMID:36268112. PMCID:PMC9558693.

PMID: 36268112
PMCID: PMC9558693
Funding: - Horizon 2020: 53000015, 727658, 780495, 875160 - Leibniz-Gemeinschaft: P99/2020

Links