Knowledge4COVID-19
Knowledge4COVID-19 integrates and analyzes diverse biomedical data to construct a Knowledge Graph (KG) for discovering and predicting adverse drug effects arising from drug-drug interactions among COVID-19 treatments and medications for pre-existing conditions.
Key Features:
- Knowledge Graph Construction: Constructs a Knowledge Graph using the RDF Mapping Language and declarative mapping rules to integrate data from sources including DrugBank and CORD-19.
- Natural Language Processing (NLP): Applies NLP techniques to extract entities and predicates from scientific databases and literature for fine-grained descriptions of COVID-19 treatments and associated adverse events.
- Adverse Drug Effect Discovery: Discovers and predicts drug-drug interactions and potential adverse effects among COVID-19 treatments and medications for comorbidities such as hypertension, diabetes, and asthma.
Scientific Applications:
- Adverse interaction analysis: Enables discovery and prediction of drug-drug interactions and their associated adverse events for COVID-19 therapies.
- Treatment regimen assessment: Supports analysis of interaction risks to inform treatment considerations for patients with comorbidities such as hypertension, diabetes, or asthma.
Methodology:
Constructs a KG using RDF Mapping Language with declarative mapping rules integrating sources such as DrugBank and CORD-19; employs NLP to extract entities and predicates; and applies computational techniques for interaction discovery and prediction.
Topics
Collections
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- Python
- Added:
- 12/29/2022
- Last Updated:
- 12/29/2022
Operations
Publications
Sakor A, Jozashoori S, Niazmand E, Rivas A, Bougiatiotis K, Aisopos F, Iglesias E, Rohde PD, Padiya T, Krithara A, Paliouras G, Vidal M. Knowledge4COVID-19: A semantic-based approach for constructing a COVID-19 related knowledge graph from various sources and analyzing treatments’ toxicities. Journal of Web Semantics. 2023;75:100760. doi:10.1016/j.websem.2022.100760. PMID:36268112. PMCID:PMC9558693.