KrakenParser

KrakenParser is a streamlined toolkit that transforms Kraken-2 taxonomic reports into tidy CSV files, automatically computes relative abundances, and exposes an intuitive API suite for effortless downstream visualization.

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Topics

Metagenomics Bioinformatics Taxonomy

Details

License:: MIT
Maturity:: Emerging
Cost:: Free of charge
Tool Type:: command-line tool, web application
Operating Systems:: Mac, Linux, Windows
Programming Languages:: Python, Shell
Added:: 5/30/2025
Last Updated:: 5/30/2025

Operations

Aggregation
Visualisation

Data Inputs & Outputs

Aggregation

Inputs

Phylogenetic tree
- imzML metadata file

Outputs

Text data

Other operations do not define inputs or outputs.

Documentation

API documentation

https://github.com/PopovIILab/KrakenParser/wiki

User manual

https://github.com/PopovIILab/KrakenParser

Links

Repository

https://github.com/PopovIILab/KrakenParser

Related Tools

krakentools

Relation: uses

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