kuenm
The kuenm R package is a comprehensive set of tools to streamline and enhance ecological niche modeling using the Maxent platform. It provides a rigorous, reproducible approach to model calibration, selection, evaluation, and extrapolation risk analysis.
Key features of the kuenm package include:
1. Detailed model calibration: The package lets users fine-tune model parameters and select the best settings based on statistical significance, predictive power, and model complexity.
2. Final model creation: kuenm simplifies the process of creating final models by allowing multiple parameter sets and model transfers, reducing the time and effort required for these tasks.
3. Model evaluation: The package provides tools for assessing the performance and validity of the final models.
4. Extrapolation risk analysis: kuenm incorporates the mobility-oriented parity (MOP) metric, allowing users to evaluate the risks associated with extrapolating models to different scenarios and preventing overinterpreting model outcomes.
Topic
Ecology;Molecular interactions, pathways and networks
Detail
Software interface: Library
Language: R
License: GNU General Public License, version 2
Cost: Free of charge with restrictions
Version name: 1.1.3
Credit: PAPIIT UNAM and CONACyT-FORDECyT.
Input: -
Output: -
Contact: Marlon E. Cobos manubio13@gmail.com
Collection: -
Maturity: Stable
Publications
- kuenm: an R package for detailed development of ecological niche models using Maxent.
- Cobos ME, et al. kuenm: an R package for detailed development of ecological niche models using Maxent. kuenm: an R package for detailed development of ecological niche models using Maxent. 2019; 7:e6281. doi: 10.7717/peerj.6281
- https://doi.org/10.7717/peerj.6281
- PMID: 30755826
- PMC: PMC6368831
Download and documentation
Documentation: https://github.com/marlonecobos/kuenm/blob/master/README.md
Home page: https://github.com/marlonecobos/kuenm
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