LCMS TNO DECO

LCMS TNO DECO preprocesses high-resolution LC/HRMS data by selecting informative mass-over-charge (m/z) channels to improve deconvoluted mass spectra for downstream quantification and identification.


Key Features:

  • Informative m/z Channel Selection: Uses a metric derived from errors in isotopic distribution patterns and the quality of signals within predefined mass chromatogram blocks to pre-select informative m/z channels.
  • Data Clean-Up: Maintains intensity counts from m/z channels associated with molecular ions, adducts, 13C-isotopes, and multiply charged ions while eliminating non-informative m/z channels.
  • Automatic Processing: Automates removal of irrelevant m/z channels from deconvoluted mass spectra as an alternative to peak picking and de-isotoping without discarding valuable information.

Scientific Applications:

  • Quantification and Identification: Enhances downstream compound quantification and identification in complex samples by retaining informative m/z channels.
  • Data Integrity: Improves accuracy and reliability of mass spectra by removing non-informative m/z channels while preserving signal components relevant to analytes.

Methodology:

Evaluates isotopic distribution patterns and signal quality within specific mass chromatogram blocks to inform selection of informative m/z channels for cleaning deconvoluted mass spectra.

Topics

Collections

Details

Tool Type:
command-line tool
Added:
12/1/2015
Last Updated:
11/25/2024

Operations

Publications

Krishnan S, Verheij EER, Bas RC, Hendriks MWB, Hankemeier T, Thissen U, Coulier L. Pre‐processing liquid chromatography/high‐resolution mass spectrometry data: extracting pure mass spectra by deconvolution from the invariance of isotopic distribution. Rapid Communications in Mass Spectrometry. 2013;27(9):917-923. doi:10.1002/rcm.6517. PMID:23592192.