Lipid Data Analyzer (LDA)
Lipid Data Analyzer (LDA) annotates lipid species from chromatography-coupled tandem mass spectrometry data using embedded decision rule sets to determine lipid molecular structures.
Key Features:
- Automated Annotation: Automates identification and annotation of lipid species from high-throughput chromatography-coupled tandem mass spectrometry datasets.
- Platform Independence: Validated across mass spectrometry instruments with varying resolutions and collision energies.
- Reliability and Flexibility: Uses embedded decision rule sets to provide reliable lipid identification and a framework adaptable to different data types and experimental conditions.
- Novel Lipid Identification: Detects and annotates novel lipid molecular species beyond entries in existing lipid libraries.
Scientific Applications:
- High-throughput lipid annotation: Annotation of lipid species from chromatography-coupled tandem mass spectrometry in large-scale lipidomics studies.
- Structural elucidation: Determination of lipid molecular structures from tandem MS fragmentation patterns using decision rule sets.
- Novel lipid discovery: Identification and reporting of novel lipid molecular species to expand lipidome coverage.
- Cross-platform comparative lipidomics: Comparative analysis of lipid profiles across mass spectrometry platforms and collision-energy conditions.
Methodology:
Automated annotation of chromatography-coupled tandem mass spectrometry (MS/MS) spectra using embedded decision rule sets to determine lipid molecular structures.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 5/31/2018
- Last Updated:
- 6/27/2019
Operations
Publications
Hartler J, Triebl A, Ziegl A, Trötzmüller M, Rechberger GN, Zeleznik OA, Zierler KA, Torta F, Cazenave-Gassiot A, Wenk MR, Fauland A, Wheelock CE, Armando AM, Quehenberger O, Zhang Q, Wakelam MJO, Haemmerle G, Spener F, Köfeler HC, Thallinger GG. Deciphering lipid structures based on platform-independent decision rules. Nature Methods. 2017;14(12):1171-1174. doi:10.1038/nmeth.4470. PMID:29058722. PMCID:PMC5988032.
Documentation
Downloads
- Command-line specificationhttp://genome.tugraz.at/lda2/lda_download.shtml