LEVER

LEVER performs automated analysis of time-lapse, phase-contrast microscopy images to quantify cell proliferation dynamics and reconstruct cell lineages.


Key Features:

  • Automated segmentation, tracking, and lineaging: Implements algorithms for segmentation, cell tracking, and lineage reconstruction from phase-contrast time-lapse movies.
  • Time-lapse and phase-contrast support: Operates specifically on phase-contrast microscopy time-lapse image sequences for live-cell studies.
  • Quantification of proliferation dynamics: Extracts division events and lineage relationships to enable analysis of cell proliferation over time.

Scientific Applications:

  • Cell proliferation dynamics: Enables quantitative analysis of cell division behavior and temporal proliferation patterns from time-lapse data.
  • Vertebrate stem cell research: Supports tracking and lineage analysis to study behavior and development patterns of vertebrate stem cells.
  • Cancer research: Supports analysis of proliferating cancer cells to investigate tumor growth dynamics and clonal evolution.

Methodology:

Applies automated segmentation, tracking, and lineaging algorithms to phase-contrast time-lapse (live-cell) microscopy images for lineage reconstruction and proliferation analysis.

Topics

Details

License:
GPL-3.0
Tool Type:
desktop application
Operating Systems:
Windows
Programming Languages:
MATLAB
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Winter M, Mankowski W, Wait E, Temple S, Cohen AR. LEVER: software tools for segmentation, tracking and lineaging of proliferating cells. Bioinformatics. 2016;32(22):3530-3531. doi:10.1093/bioinformatics/btw406. PMID:27423896. PMCID:PMC5181556.

PMID: 27423896
PMCID: PMC5181556
Funding: - NIH NINDS: R01NS076709 - NIH NIA: R01AG041861

Documentation

Links