LEVER
LEVER performs automated analysis of time-lapse, phase-contrast microscopy images to quantify cell proliferation dynamics and reconstruct cell lineages.
Key Features:
- Automated segmentation, tracking, and lineaging: Implements algorithms for segmentation, cell tracking, and lineage reconstruction from phase-contrast time-lapse movies.
- Time-lapse and phase-contrast support: Operates specifically on phase-contrast microscopy time-lapse image sequences for live-cell studies.
- Quantification of proliferation dynamics: Extracts division events and lineage relationships to enable analysis of cell proliferation over time.
Scientific Applications:
- Cell proliferation dynamics: Enables quantitative analysis of cell division behavior and temporal proliferation patterns from time-lapse data.
- Vertebrate stem cell research: Supports tracking and lineage analysis to study behavior and development patterns of vertebrate stem cells.
- Cancer research: Supports analysis of proliferating cancer cells to investigate tumor growth dynamics and clonal evolution.
Methodology:
Applies automated segmentation, tracking, and lineaging algorithms to phase-contrast time-lapse (live-cell) microscopy images for lineage reconstruction and proliferation analysis.
Topics
Details
- License:
- GPL-3.0
- Tool Type:
- desktop application
- Operating Systems:
- Windows
- Programming Languages:
- MATLAB
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Image analysis
Publications
Winter M, Mankowski W, Wait E, Temple S, Cohen AR. LEVER: software tools for segmentation, tracking and lineaging of proliferating cells. Bioinformatics. 2016;32(22):3530-3531. doi:10.1093/bioinformatics/btw406. PMID:27423896. PMCID:PMC5181556.