lindna
lindna generates linear maps of DNA constructs to visualize and analyze genetic sequences for molecular biology applications.
Key Features:
- Linear mapping: Generates detailed linear maps of DNA constructs for visualization and analysis of sequence features.
- EMBOSS integration: Operates as a component of the EMBOSS suite and interoperates with EMBOSS applications and libraries.
Scientific Applications:
- Genetic engineering: Visualizes construct architecture to support design and modification of engineered DNA.
- Synthetic biology: Assists in design and analysis of synthetic constructs by mapping sequence elements and features.
- Construct validation: Supports analysis and inspection of DNA constructs during validation and troubleshooting.
Methodology:
Implemented using EMBOSS C programming libraries and following the EMBOSS Developer's Guide, with support for EMBOSS API programming and ACD file customization.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C
- Added:
- 11/8/2015
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Map rendering
Inputs
Publications
Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.
Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.
Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.
Documentation
Terms of use
http://emboss.open-bio.org/html/dev/ch01s01.htmlCitation instructions
http://emboss.open-bio.org/html/use/pr02s04.html