lindna

lindna generates linear maps of DNA constructs to visualize and analyze genetic sequences for molecular biology applications.


Key Features:

  • Linear mapping: Generates detailed linear maps of DNA constructs for visualization and analysis of sequence features.
  • EMBOSS integration: Operates as a component of the EMBOSS suite and interoperates with EMBOSS applications and libraries.

Scientific Applications:

  • Genetic engineering: Visualizes construct architecture to support design and modification of engineered DNA.
  • Synthetic biology: Assists in design and analysis of synthetic constructs by mapping sequence elements and features.
  • Construct validation: Supports analysis and inspection of DNA constructs during validation and troubleshooting.

Methodology:

Implemented using EMBOSS C programming libraries and following the EMBOSS Developer's Guide, with support for EMBOSS API programming and ACD file customization.

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Mature
Cost:
Free of charge
Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C
Added:
11/8/2015
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Map rendering

Publications

Ison JC, Rice PM, Bleasby AJ. EMBOSS Developer's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151405.

Rice P, Longden I, Bleasby A. EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics. 2000;16(6):276-277. doi:10.1016/s0168-9525(00)02024-2.

Bleasby AJ, Ison JC, Rice PM. EMBOSS Administrator's Guide. Unknown Journal. 2011. doi:10.1017/cbo9781139151399.

Documentation

Downloads

Links