Linkprep

Linkprep create LINKAGE style .pre and .dat files from AGRF style data. This creates standard format input files for linkage analysis software from human genotyping data.

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Topics

Genotyping Linkage

Details

Tool Type:: command-line tool
Operating Systems:: Linux
Programming Languages:: Perl
Added:: 12/18/2017
Last Updated:: 12/10/2018

Operations

Formatting
Linkage analysis
Genotyping

Publications

Rubio JP, Bahlo M, Butzkueven H, van der Mei IA, Sale MM, Dickinson JL, Groom P, Johnson LJ, Simmons RD, Tait B, Varney M, Taylor B, Dwyer T, Williamson R, Gough NM, Kilpatrick TJ, Speed TP, Foote SJ. Genetic Dissection of the Human Leukocyte Antigen Region by Use of Haplotypes of Tasmanians with Multiple Sclerosis. The American Journal of Human Genetics. 2002;70(5):1125-1137. doi:10.1086/339932. PMID:11923913. PMCID:PMC447590.

DOI: 10.1086/339932

Links

Software catalogue

http://www.mybiosoftware.com/linkprep-2-9-create-linkage-style-files-agrf-style-data.html

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