Lion Localizer

Lion Localizer determines the geographic provenance of seized lion (Panthera leo) samples by comparing mitochondrial DNA (mtDNA) cytochrome b sequences to a curated reference database for conservation and forensic purposes.


Key Features:

  • Comprehensive mtDNA database: Contains mitochondrial DNA sequences from lions sampled at 146 localities across Africa and India compiled from previously published studies.
  • Sequence length support: Supports cytochrome b sequences of 350 base pairs (bp) or 1,140 bp derived from seized lion products.
  • Match identification: Identifies exact or partial sequence matches between queried samples and database entries.
  • Geospatial mapping of matches: Maps matched database localities onto a geographic representation of Africa to indicate potential sample provenance.
  • Provenance tracing: Associates sequence matches with geographic localities to trace movement of trafficked items from origin toward transit or destination countries.

Scientific Applications:

  • Forensic provenance assignment: Provides genetic evidence to assign geographic origin of confiscated lion body parts for wildlife crime investigations.
  • Poaching source identification: Identifies potential source regions to inform spatial analyses of poaching patterns.
  • Conservation planning: Informs targeted conservation actions and mitigation strategies by revealing geographic origins of impacted populations.
  • Illegal trade network analysis: Supports tracing of trafficking routes by linking seized specimens to known sampling localities.

Methodology:

Cytochrome b mtDNA sequences (350 or 1,140 bp) obtained from seized lion products are compared against a curated reference database of lion mtDNA to identify exact or partial matches, and matched localities are mapped to indicate sample provenance.

Topics

Details

Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Linux, Windows
Added:
4/19/2024
Last Updated:
11/24/2024

Operations

Publications

Au WC, Dures SG, Ishida Y, Green CE, Zhao K, Ogden R, Roca AL. Lion Localizer: A software tool for inferring the provenance of lions (<i>Panthera leo</i>) using mitochondrial DNA. Journal of Heredity. 2023;115(2):166-172. doi:10.1093/jhered/esad072. PMID:37952226.

PMID: 37952226
Funding: - United States Agency for International Development: G-017