load_multifastq

load_multifastq loads and organizes multiple FASTQ files to prepare and manage high-throughput next-generation sequencing datasets within the Galaxy framework.


Key Features:

  • Integration with Galaxy Project: Operates within the Galaxy framework for file import and dataset management.
  • Scalability for Large-Scale Analyses: Supports simultaneous loading of multiple FASTQ files and large datasets typical of next-generation sequencing projects.
  • Transparency and Reproducibility: Leverages Galaxy's tracking of computational processes to record provenance and support reproducibility.
  • Automated Import and Organization: Automates importing and organizing FASTQ files within Galaxy's infrastructure.

Scientific Applications:

  • Biomedical Research: Manages FASTQ datasets used in biomedical studies that rely on high-throughput sequencing.
  • Data-Intensive Studies: Supports projects requiring integration and analysis of extensive sequencing datasets across multiple samples or conditions.
  • Comparative and Large-Scale Genomic Analyses: Facilitates comparative analyses and large-scale genomic studies by consolidating and preparing multiple FASTQ files for downstream processing.

Methodology:

Operates within the Galaxy framework, automating the import and organization of FASTQ files and using Galaxy's infrastructure to manage associated computational tasks and provenance tracking.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Loading

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links