load_multifastq
load_multifastq loads and organizes multiple FASTQ files to prepare and manage high-throughput next-generation sequencing datasets within the Galaxy framework.
Key Features:
- Integration with Galaxy Project: Operates within the Galaxy framework for file import and dataset management.
- Scalability for Large-Scale Analyses: Supports simultaneous loading of multiple FASTQ files and large datasets typical of next-generation sequencing projects.
- Transparency and Reproducibility: Leverages Galaxy's tracking of computational processes to record provenance and support reproducibility.
- Automated Import and Organization: Automates importing and organizing FASTQ files within Galaxy's infrastructure.
Scientific Applications:
- Biomedical Research: Manages FASTQ datasets used in biomedical studies that rely on high-throughput sequencing.
- Data-Intensive Studies: Supports projects requiring integration and analysis of extensive sequencing datasets across multiple samples or conditions.
- Comparative and Large-Scale Genomic Analyses: Facilitates comparative analyses and large-scale genomic studies by consolidating and preparing multiple FASTQ files for downstream processing.
Methodology:
Operates within the Galaxy framework, automating the import and organization of FASTQ files and using Galaxy's infrastructure to manage associated computational tasks and provenance tracking.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Loading
Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.