LOCAN
LOCAN provides Python data structures and analysis methods to process single-molecule localization microscopy (SMLM) point-localization datasets for quantitative super-resolution microscopy studies.
Key Features:
- Data Structures: Well-defined Python data structures tailored to represent and manage SMLM point-localization data.
- Analysis Methods: A suite of analysis methods for quantitative and comprehensive examination of SMLM localization datasets.
- Customization: Flexible customization of analysis procedures to adapt analysis workflows to specific experimental needs.
- Script and computable-notebook execution: Analysis methods can be executed within scripts or computable notebooks.
Scientific Applications:
- Super-resolution microscopy: Processing and quantitative analysis of SMLM datasets for super-resolution imaging studies.
- Cellular biology: Analysis of nanoscale spatial organization in cellular biology using point-localization data.
- Neurobiology: Investigation of molecular distributions and nanoscale structures in neurobiology with SMLM data.
- Molecular interaction studies: Characterization of molecular interactions and nanoscale spatial relationships from localization data.
Methodology:
LOCAN implements Python-based data structures combined with versatile analysis methods to handle and analyze complex SMLM localization point datasets.
Topics
Details
- License:
- BSD-3-Clause
- Cost:
- Free of charge
- Tool Type:
- command-line tool, library
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- C, Python
- Added:
- 6/28/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Doose S. LOCAN: a python library for analyzing single-molecule localization microscopy data. Bioinformatics. 2022;38(9):2670-2672. doi:10.1093/bioinformatics/btac160. PMID:35298593.
PMID: 35298593
Funding: - Deutsche Forschungsgemeinschaft [DFG: DO1257/4-1
- TransRegio 166 Receptor Light, project: B02
Documentation
User manual
https://locan.readthedocs.io