LOCAN

LOCAN provides Python data structures and analysis methods to process single-molecule localization microscopy (SMLM) point-localization datasets for quantitative super-resolution microscopy studies.


Key Features:

  • Data Structures: Well-defined Python data structures tailored to represent and manage SMLM point-localization data.
  • Analysis Methods: A suite of analysis methods for quantitative and comprehensive examination of SMLM localization datasets.
  • Customization: Flexible customization of analysis procedures to adapt analysis workflows to specific experimental needs.
  • Script and computable-notebook execution: Analysis methods can be executed within scripts or computable notebooks.

Scientific Applications:

  • Super-resolution microscopy: Processing and quantitative analysis of SMLM datasets for super-resolution imaging studies.
  • Cellular biology: Analysis of nanoscale spatial organization in cellular biology using point-localization data.
  • Neurobiology: Investigation of molecular distributions and nanoscale structures in neurobiology with SMLM data.
  • Molecular interaction studies: Characterization of molecular interactions and nanoscale spatial relationships from localization data.

Methodology:

LOCAN implements Python-based data structures combined with versatile analysis methods to handle and analyze complex SMLM localization point datasets.

Topics

Details

License:
BSD-3-Clause
Cost:
Free of charge
Tool Type:
command-line tool, library
Operating Systems:
Mac, Linux, Windows
Programming Languages:
C, Python
Added:
6/28/2022
Last Updated:
11/24/2024

Operations

Publications

Doose S. LOCAN: a python library for analyzing single-molecule localization microscopy data. Bioinformatics. 2022;38(9):2670-2672. doi:10.1093/bioinformatics/btac160. PMID:35298593.

PMID: 35298593
Funding: - Deutsche Forschungsgemeinschaft [DFG: DO1257/4-1 - TransRegio 166 Receptor Light, project: B02

Documentation