LoRSI
LoRSI computes a stability interval for log-rank test P-values to quantify uncertainty introduced by sample labeling errors in survival analysis.
Key Features:
- Addressing Labeling Errors: Quantifies the effect of sample labeling errors on group assignments used by the log-rank test.
- Stability Interval Calculation: Computes a stability interval around the original log-rank P-value that reflects uncertainty due to labeling inaccuracies.
- Algorithmic Approach: Employs a novel, efficiently computable algorithm to derive the stability interval with a rigorous correctness proof.
- Python Implementation: Provided as a Python implementation for integration into computational analysis workflows.
- Demonstration on Datasets: Validated on multiple datasets to demonstrate behavior and performance in real-world survival analyses.
Scientific Applications:
- Oncology: Assesses robustness of survival differences and treatment effect conclusions in oncology studies using time-to-event endpoints.
- Epidemiology: Evaluates sensitivity of survival analyses in epidemiological studies to sample labeling errors.
- Biomedical time-to-event research: Provides uncertainty quantification for log-rank P-values to inform conclusions about treatment effects or disease progression in biomedical studies involving time-to-event data.
Methodology:
Defines uncertainty from sample labeling errors in the context of the log-rank test and computes a stability interval for the log-rank P-value using a provably correct, efficiently computable algorithm.
Topics
Details
- License:
- Not licensed
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Programming Languages:
- Python
- Added:
- 12/5/2021
- Last Updated:
- 11/24/2024
Operations
Publications
Galili B, Samohi A, Yakhini Z. On the stability of log-rank test under labeling errors. Bioinformatics. 2021;37(23):4451-4459. doi:10.1093/bioinformatics/btab495. PMID:34255820. PMCID:PMC8652036.
PMID: 34255820
PMCID: PMC8652036
Funding: - European Union’s Horizon 2020 Research and Innovation Program: 847912