LPSN

LPSN provides curated nomenclature information for prokaryotes to support microbial systematics and genome-based taxonomy.

Key Features:

• Expert curation: Maintains an authoritative record of prokaryotic names with standing in nomenclature, including taxon names and associated sequences.
• Standards compliance: Adheres to the International Code of Nomenclature of Prokaryotes to ensure accurate and reliable nomenclature data.
• Comprehensive database content: Contains an expanded and up-to-date database of taxon names and linked sequence information from public data repositories.
• Genome-based taxonomy support: Supports genome-based methods and integrates sequence data for taxonomic purposes.
• Integration with TYGS: Interconnects with the Type (Strain) Genome Server (TYGS) to enable high-throughput genome-based classification.
• Access to bioinformatic algorithms: Provides high-level facilities for access to bioinformatic algorithms and handling of large datasets.
• Change tracking: Enables tracking of nomenclatural changes and updates within the database.

Scientific Applications:

• Microbial systematics: Serves as a reference for researchers conducting microbial systematics studies.
• Taxonomic classification: Supports genome-based taxonomic classification workflows via linkage with TYGS and bioinformatic algorithms.
• Nomenclature reference: Provides authoritative nomenclature information under the International Code of Nomenclature of Prokaryotes.
• Management of taxon and sequence data: Facilitates organization and reference of taxon names and associated sequences from public data repositories.
• Large-scale genomic analyses: Supports analyses requiring handling of extensive taxon name and sequence datasets.

Methodology:

Integration of expert curation with bioinformatic algorithms and high-throughput genome-based classification provided by the Type (Strain) Genome Server (TYGS).