LQAS-IMP
LQAS-IMP modifies Lot Quality Assurance Sampling to incorporate imperfect diagnostic test sensitivity and specificity for valid classification of prevalence-based health indicators.
Key Features:
- Adaptation for Imperfect Tests: Modifies standard LQAS procedures to account for diagnostic test sensitivity and specificity, ensuring classification errors remain within user-specified limits.
- Error Correction: Derives a modified procedure that incorporates test sensitivity and specificity into system design to correct inflation of classification errors caused by imperfect tests.
- System Design Adjustment: Integrates sensitivity and specificity into the calculation of sample size and decision rules to yield valid classification errors.
- Application Case: Applied to COVID-19 serosurveillance among healthcare workers at Zanmi Lasante in Haiti using antibody tests with imperfect diagnostic accuracy.
Scientific Applications:
- Health indicator monitoring: Enables classification of areas or populations for prevalence-based indicators in low-resource settings where tests are imperfect.
- Serosurveillance: Supports serosurveys for COVID-19 antibodies to assess prior circulation among healthcare workers using limited antibody tests.
- Prevalence estimation and inference: Facilitates valid prevalence-related inferences when diagnostic sensitivity and specificity are less than perfect.
Methodology:
Derives a modified LQAS procedure that explicitly incorporates diagnostic test sensitivity and specificity into system design to compute adjusted sample size and decision rules that maintain user-specified classification error rates.
Topics
Details
- License:
- MIT
- Tool Type:
- library
- Programming Languages:
- R
- Added:
- 1/18/2021
- Last Updated:
- 2/19/2021
Operations
Publications
Fulcher IR, Clisbee M, Lambert W, Leandre FR, Hedt-Gauthier B. Adapting Lot Quality Assurance Sampling to accommodate imperfect tests: application to COVID-19 serosurveillance in Haiti. Unknown Journal. 2020. doi:10.1101/2020.09.11.20193052.