M-IOLITE
M-IOLITE performs automated processing, normalization, peak identification, and metabolic network analysis of Gas Chromatography–Mass Spectrometry (GC-MS) metabolomics data to support high-throughput metabolomic experiments.
Key Features:
- Streamlined Data Analysis: Automates data processing, validation, and annotation of GC-MS metabolomic datasets.
- Specialized Normalization Methods: Implements normalization techniques tailored for GC-MS data to ensure consistency across experiments.
- Safe Data Repository: Provides a secure repository for storing biological samples and associated metadata.
- Comprehensive Peak Library: Includes the MESBL GC-MS metabolite peak database containing over 900 standardized metabolite peaks and integrates in-house standards, the GOLM database, and the Human Metabolome Database.
- Unknown Peak Identification: Provides methods for identification of unknown peaks detected in GC-MS metabolomic analyses.
- Integration with Metabolic Network Analysis: Incorporates metabolic network analysis into data interpretation to link metabolomic profiles with pathways.
Scientific Applications:
- Biomedical Research: Investigating dynamic metabolic responses in diseases and disorders.
- Pharmacology: Studying drug metabolism and interactions.
- Agriculture: Analyzing plant metabolic pathways for crop improvement.
- Environmental Science: Analyzing microbial communities and their metabolic activities.
Methodology:
Automated data processing, validation, and annotation; specialized normalization methods for GC-MS; matching to the MESBL GC-MS peak library (including in-house standards, GOLM, and the Human Metabolome Database); unknown peak identification methods; and metabolic network analysis.
Topics
Details
- License:
- Other
- Maturity:
- Emerging
- Tool Type:
- desktop application, web application, workflow
- Operating Systems:
- Windows
- Programming Languages:
- Python
- Added:
- 9/11/2017
- Last Updated:
- 6/16/2020
Operations
Publications
Maga-Nteve C, Klapa MI. Streamlining GC-MS metabolomic analysis using the M-IOLITE software suite. IFAC-PapersOnLine. 2016;49(26):286-288. doi:10.1016/j.ifacol.2016.12.140.
Documentation
General
http://miolite2.iceht.forth.grWeb site with citation information, information about downloading and contacting developers
Downloads
- Container filehttp://miolite2.iceht.forth.grFree upon request for academic users
Links
Other
http://miolite2.iceht.forth.gr(Site describing the application and from which a download request can be sent to the developers of the database)