M-IOLITE

M-IOLITE performs automated processing, normalization, peak identification, and metabolic network analysis of Gas Chromatography–Mass Spectrometry (GC-MS) metabolomics data to support high-throughput metabolomic experiments.


Key Features:

  • Streamlined Data Analysis: Automates data processing, validation, and annotation of GC-MS metabolomic datasets.
  • Specialized Normalization Methods: Implements normalization techniques tailored for GC-MS data to ensure consistency across experiments.
  • Safe Data Repository: Provides a secure repository for storing biological samples and associated metadata.
  • Comprehensive Peak Library: Includes the MESBL GC-MS metabolite peak database containing over 900 standardized metabolite peaks and integrates in-house standards, the GOLM database, and the Human Metabolome Database.
  • Unknown Peak Identification: Provides methods for identification of unknown peaks detected in GC-MS metabolomic analyses.
  • Integration with Metabolic Network Analysis: Incorporates metabolic network analysis into data interpretation to link metabolomic profiles with pathways.

Scientific Applications:

  • Biomedical Research: Investigating dynamic metabolic responses in diseases and disorders.
  • Pharmacology: Studying drug metabolism and interactions.
  • Agriculture: Analyzing plant metabolic pathways for crop improvement.
  • Environmental Science: Analyzing microbial communities and their metabolic activities.

Methodology:

Automated data processing, validation, and annotation; specialized normalization methods for GC-MS; matching to the MESBL GC-MS peak library (including in-house standards, GOLM, and the Human Metabolome Database); unknown peak identification methods; and metabolic network analysis.

Topics

Details

License:
Other
Maturity:
Emerging
Tool Type:
desktop application, web application, workflow
Operating Systems:
Windows
Programming Languages:
Python
Added:
9/11/2017
Last Updated:
6/16/2020

Operations

Publications

Maga-Nteve C, Klapa MI. Streamlining GC-MS metabolomic analysis using the M-IOLITE software suite. IFAC-PapersOnLine. 2016;49(26):286-288. doi:10.1016/j.ifacol.2016.12.140.

Documentation

General
http://miolite2.iceht.forth.gr
Web site with citation information, information about downloading and contacting developers

Downloads

Links

Other
http://miolite2.iceht.forth.gr
(Site describing the application and from which a download request can be sent to the developers of the database)