M2aia
M²aia (MSI applications for interactive analysis in MITK) is a software tool enabling interactive signal processing and visualisation of mass spectrometry imaging (MSI) datasets. M²aia extends the open source Medical Imaging and Interaction Toolkit (MITK; https://www.mitk.org) and provides powerful methods that the MSI community can adopt, exploit and improve further. In it’s current state, it is designed to enable multi-modal 2D registration and 3D MSI reconstruction.
Topics
Details
- License:
- BSD-3-Clause
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- command-line tool, desktop application
- Operating Systems:
- Linux, Windows
- Programming Languages:
- C++
- Added:
- 6/22/2021
- Last Updated:
- 2/26/2024
Operations
Data Inputs & Outputs
Data handling
Documentation
Training material
https://www.protocols.io/view/supporting-protocol-for-use-case-1-dimensionality-brw4m7gwSupporting protocol for use-case 1: Dimensionality reduction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data"
Training material
https://www.protocols.io/view/supporting-protocol-for-use-case-2-multi-modal-3d-bvq8n5zwSupporting protocol for use-case 2: Multi-modal 3D image reconstruction in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data"
Training material
https://www.protocols.io/view/supporting-protocol-for-use-case-1-n-linked-glycan-bvq5n5y6Supporting protocol for use-case 1: N-linked glycan m/z candidate detection in "M2aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data"
Training material
https://doi.org/10.24433/CO.2384502.v1Supporting capsule for use-case 1: R-based processing in "M²aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data"
Training material
https://doi.org/10.24433/CO.7662658.v1Supporting capsule for use-case 1: Command-line application based pre-processing in "M²aia - Interactive, fast and memory efficient analysis of 2D and 3D multi-modal mass spectrometry imaging data"
Downloads
- Downloads pagehttps://m2aia.de
Links
Issue tracker', 'Repository
https://github.com/m2aia/m2aiaOther
https://www.mitk.org