macroMS

macroMS performs image-guided matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry acquisition and analysis to enable spatially resolved chemical characterization of macroscopic samples.


Key Features:

  • Image-guided analysis: Aligns optical imaging from a camera or flatbed scanner to guide MALDI-TOF acquisition for targeted sampling of specific locations on sample surfaces such as microbial colonies and liquid microdroplets.
  • Target recognition and filtering: Identifies and filters targets within optical images to restrict spectral acquisition to relevant sample regions.
  • Correction for optical distortion: Corrects optical distortion in acquired images to improve the spatial accuracy of target localization and alignment with spectral data.
  • Custom geometry file integration: Integrates custom geometry files for mass spectrometry devices to enable targeted acquisition at predefined coordinates.
  • Data analysis and visualization: Provides data analysis and visualization tools to assist identification of samples containing compounds of interest, with limited in-suite analysis capabilities.

Scientific Applications:

  • High-throughput screening: Applied to rapid screening workflows, including assaying enzyme mutant libraries of Saccharomyces cerevisiae.
  • Nanoliter droplet analysis: Used for analysis of nL droplet arrays containing Escherichia coli and Pseudomonas fluorescens.
  • Rapid large-scale biochemical analyses: Enables high-throughput processing at rates reported at approximately 2 seconds per sample for large-scale chemical characterization.

Methodology:

Optical imaging of macroscopic samples is processed to identify target areas, optical distortions are corrected, custom geometry files are integrated for targeted MALDI-TOF acquisition, and resulting spectra are analyzed and visualized within the suite.

Topics

Details

Tool Type:
web application
Added:
10/4/2021
Last Updated:
9/3/2024

Operations

Publications

Choe K, Xue P, Zhao H, Sweedler JV. macroMS: Image-Guided Analysis of Random Objects by Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry. Journal of the American Society for Mass Spectrometry. 2021;32(5):1180-1188. doi:10.1021/jasms.1c00013. PMID:33822609. PMCID:PMC8102432.

PMID: 33822609
PMCID: PMC8102432
Funding: - Biological and Environmental Research: DE-SC0018420 - National Institute on Drug Abuse: P30DA018310

Documentation