maigesPack

maigesPack provides handling and analysis of cDNA microarray data by integrating and coordinating functions from multiple Bioconductor packages.


Key Features:

  • Integration of Multiple Packages: Integrates functions from multiple Bioconductor packages to enable coordinated analyses of cDNA microarray data.
  • Coordination and Efficiency: Coordinates functionalities across packages to streamline data processing and analysis workflows for microarray experiments.
  • Interoperability with Bioconductor: Operates within the Bioconductor ecosystem to maintain compatibility with other genomics and molecular biology packages.

Scientific Applications:

  • cDNA Microarray Data Analysis: Analyzes cDNA microarray experiments to measure gene expression levels across samples.
  • Interdisciplinary Research Support: Supports collaborations among biologists, statisticians, and bioinformaticians by integrating statistical and bioinformatics functions.

Methodology:

Implemented in the statistical programming language R and built on the Bioconductor framework through integration of functions from multiple Bioconductor packages.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

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