MAIT

MAIT performs end-to-end statistical analysis and peak annotation of liquid chromatography–mass spectrometry (LC/MS) metabolomic data to enable metabolite identification and validation.


Key Features:

  • End-to-end statistical analysis: Performs statistical analysis of LC/MS metabolomic datasets.
  • Peak annotation: Enhances annotation and characterization of chromatographic peaks to support metabolite identification.
  • Modular workflows: Provides modular functions that allow customization of analysis workflows.
  • Statistical validation: Implements validation of statistical analysis results to assess reliability.
  • Output generation: Produces detailed files containing statistical results, peak annotations, and identified metabolites.

Scientific Applications:

  • Biomarker discovery: Supports identification of metabolite biomarkers from LC/MS data.
  • Metabolic pathway elucidation: Facilitates elucidation of metabolic pathways through annotated metabolite profiles.
  • Systems biology: Enables integration of metabolomic results into systems biology studies.

Methodology:

Processes LC/MS data using peak annotation and statistical analysis implemented as modular functions, validates statistical results, and writes files with statistical results, peak annotations, and identified metabolites.

Topics

Collections

Details

License:
GPL-2.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
1/10/2019

Operations

Data Inputs & Outputs

Publications

Fernández-Albert F, Llorach R, Andrés-Lacueva C, Perera A. An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit). Bioinformatics. 2014;30(13):1937-1939. doi:10.1093/bioinformatics/btu136. PMID:24642061. PMCID:PMC4071204.

Documentation

Downloads