MAIT
MAIT performs end-to-end statistical analysis and peak annotation of liquid chromatography–mass spectrometry (LC/MS) metabolomic data to enable metabolite identification and validation.
Key Features:
- End-to-end statistical analysis: Performs statistical analysis of LC/MS metabolomic datasets.
- Peak annotation: Enhances annotation and characterization of chromatographic peaks to support metabolite identification.
- Modular workflows: Provides modular functions that allow customization of analysis workflows.
- Statistical validation: Implements validation of statistical analysis results to assess reliability.
- Output generation: Produces detailed files containing statistical results, peak annotations, and identified metabolites.
Scientific Applications:
- Biomarker discovery: Supports identification of metabolite biomarkers from LC/MS data.
- Metabolic pathway elucidation: Facilitates elucidation of metabolic pathways through annotated metabolite profiles.
- Systems biology: Enables integration of metabolomic results into systems biology studies.
Methodology:
Processes LC/MS data using peak annotation and statistical analysis implemented as modular functions, validates statistical results, and writes files with statistical results, peak annotations, and identified metabolites.
Topics
Collections
Details
- License:
- GPL-2.0
- Tool Type:
- command-line tool, library
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R
- Added:
- 1/17/2017
- Last Updated:
- 1/10/2019
Operations
Data Inputs & Outputs
Publications
Fernández-Albert F, Llorach R, Andrés-Lacueva C, Perera A. An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit). Bioinformatics. 2014;30(13):1937-1939. doi:10.1093/bioinformatics/btu136. PMID:24642061. PMCID:PMC4071204.