Make2D-DB II

Make2D-DB II provides a federated framework for creating, converting, publishing, interconnecting, and maintaining two-dimensional gel electrophoresis (2D-PAGE) databases to support large-scale proteomic data integration.


Key Features:

  • Database operations: Creation, conversion, publication, and maintenance of 2D-PAGE databases.
  • Federated database environment: Provides a federated architecture for managing distributed 2D-PAGE datasets.
  • Automatic data updates: Supports automatic updating of data linked to external resources.
  • Dynamic interconnection: Enables dynamic linking of remote databases to form a unified virtual database.

Scientific Applications:

  • Proteomics research: Management and integration of 2D-PAGE (2-DE) datasets for protein separation and analysis.
  • Data integration: Integration of data from multiple 2D-PAGE sources to enhance comparative proteomic analyses.
  • Collaborative research: Linking distributed 2D-PAGE databases to support cross-institutional proteomics studies.

Methodology:

Employs a federated database approach with dynamic interconnections between remote databases and mechanisms for automatic updates from external resources.

Topics

Collections

Details

Tool Type:
web application
Operating Systems:
Linux, Mac
Programming Languages:
Perl
Added:
12/6/2017
Last Updated:
8/28/2025

Operations

Publications

Mostaguir K, Hoogland C, Binz P, Appel RD. The Make 2D‐DB II package: Conversion of federated two‐dimensional gel electrophoresis databases into a relational format and interconnection of distributed databases. PROTEOMICS. 2003;3(8):1441-1444. doi:10.1002/pmic.200300483. PMID:12923769.

Documentation