mapDATAge

mapDATAge visualizes spatiotemporal distributions of alleles, haplogroups, and ancestry in ancient DNA datasets to support analyses of genetic change across space and time.


Key Features:

  • Interactive mapping: Visualizes allele, haplogroup, and ancestry distributions across spatial and temporal dimensions for ancient DNA datasets.
  • Automated modules: Provides automated modules that streamline the mapping and visualization of spatiotemporal genetic data.

Scientific Applications:

  • Archaeogenetics: Assess spatiotemporal genetic patterns to investigate past human populations and their movements.
  • Population genetics: Analyze changes in allele and haplogroup frequencies over time and geography to study population dynamics.
  • Evolutionary biology: Examine temporal and spatial patterns of genetic variation relevant to evolutionary processes.

Methodology:

Implemented as an R package using Shiny and automated modules for visualization of spatiotemporal allele, haplogroup, and ancestry distributions from ancient DNA.

Topics

Details

License:
GPL-3.0
Cost:
Free of charge
Tool Type:
command-line tool, web application
Operating Systems:
Mac, Linux, Windows
Programming Languages:
R
Added:
9/6/2022
Last Updated:
11/24/2024

Operations

Publications

Liu X, Orlando L. mapDATAge: a ShinyR package to chart ancient DNA data through space and time. Bioinformatics. 2022;38(16):3992-3994. doi:10.1093/bioinformatics/btac425. PMID:35771611. PMCID:PMC9364369.

PMID: 35771611
PMCID: PMC9364369
Funding: - Marie Curie Intra-European Fellowship programme: 101027750 - European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme: 681605