mapDATAge
mapDATAge visualizes spatiotemporal distributions of alleles, haplogroups, and ancestry in ancient DNA datasets to support analyses of genetic change across space and time.
Key Features:
- Interactive mapping: Visualizes allele, haplogroup, and ancestry distributions across spatial and temporal dimensions for ancient DNA datasets.
- Automated modules: Provides automated modules that streamline the mapping and visualization of spatiotemporal genetic data.
Scientific Applications:
- Archaeogenetics: Assess spatiotemporal genetic patterns to investigate past human populations and their movements.
- Population genetics: Analyze changes in allele and haplogroup frequencies over time and geography to study population dynamics.
- Evolutionary biology: Examine temporal and spatial patterns of genetic variation relevant to evolutionary processes.
Methodology:
Implemented as an R package using Shiny and automated modules for visualization of spatiotemporal allele, haplogroup, and ancestry distributions from ancient DNA.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- command-line tool, web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- R
- Added:
- 9/6/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Liu X, Orlando L. mapDATAge: a ShinyR package to chart ancient DNA data through space and time. Bioinformatics. 2022;38(16):3992-3994. doi:10.1093/bioinformatics/btac425. PMID:35771611. PMCID:PMC9364369.
PMID: 35771611
PMCID: PMC9364369
Funding: - Marie Curie Intra-European Fellowship programme: 101027750
- European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme: 681605