MAPI
MAPI visualizes and enables integrative analysis of large-scale genomic datasets produced by next-generation sequencing (NGS) and array-based profiling methods.
Key Features:
- High-Performance Visualization: Implements high-performance rendering to manage extensive, heterogeneous genomic datasets on standard desktop systems.
- Integrative Data Support: Supports next-generation sequencing (NGS) and array-based profiling data and the integration of clinical and phenotypic information.
- Flexible Data Loading: Allows loading and visualization of both local and remote datasets.
- Modular Architecture: Employs a modular design to adapt to various research scenarios.
Scientific Applications:
- Exploratory Genomic Analysis: Facilitates inspection and exploration of NGS and array-based genomic datasets.
- Integrative Clinical-Genomic Studies: Enables combining genetic data with clinical and phenotypic information for integrative analyses.
- Multidimensional Genomics Research: Supports studies that require visualization of diverse genomic data types for multi-dimensional analysis.
Methodology:
Implements high-performance rendering and a modular architecture to visualize and explore heterogeneous genomic datasets.
Topics
Collections
Details
- License:
- GPL-3.0
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- command-line tool
- Operating Systems:
- Linux
- Programming Languages:
- Java
- Added:
- 7/18/2016
- Last Updated:
- 11/25/2024
Operations
Publications
Thorvaldsdottir H, Robinson JT, Mesirov JP. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Briefings in Bioinformatics. 2012;14(2):178-192. doi:10.1093/bib/bbs017. PMID:22517427. PMCID:PMC3603213.
Documentation
General
http://bitlab-es.com/mapi/