Marky
Marky manages collaborative, iterative document annotation and annotation tracking to produce high-quality annotated corpora for biomedical text mining.
Key Features:
- Multi-User and Iterative Project Management: Supports collaborative annotation across multiple users and iterative rounds of document analysis to refine annotations over time.
- Annotation Tracking System: Records all user annotations, enabling agreement analysis and allowing annotators to review, reject, or modify previous annotations.
- Quality Control and Consistency Evaluation: Provides tools for assessing inter-annotator consistency and tracking changes across annotation rounds.
- Resource Efficiency: Reduces annotation overhead by minimizing resource and time consumption through its tracking and management features.
Scientific Applications:
- Biomedical Corpus Annotation: Facilitates creation of high-quality annotated corpora for biomedical text mining, including annotation of diseases, symptoms, and treatments.
- Annotation Quality Assessment: Enables inter-annotator agreement analysis and iterative refinement to improve corpus reliability for downstream text mining applications.
Methodology:
Operates a backend infrastructure that supports iterative project management, systematic tracking of all annotation activities, and tools for quality control and inter-annotator agreement analysis.
Topics
Details
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Annotation
Inputs
Outputs
Other operations do not define inputs or outputs.
Publications
Pérez-Pérez M, et al. Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects. Comput Methods Programs Biomed. 2015; 118:242-51. doi: 10.1016/j.cmpb.2014.11.005
PMID: 25480679
Documentation
Training material
http://sing.ei.uvigo.es/marky/tutorial.html