Marky

Marky manages collaborative, iterative document annotation and annotation tracking to produce high-quality annotated corpora for biomedical text mining.


Key Features:

  • Multi-User and Iterative Project Management: Supports collaborative annotation across multiple users and iterative rounds of document analysis to refine annotations over time.
  • Annotation Tracking System: Records all user annotations, enabling agreement analysis and allowing annotators to review, reject, or modify previous annotations.
  • Quality Control and Consistency Evaluation: Provides tools for assessing inter-annotator consistency and tracking changes across annotation rounds.
  • Resource Efficiency: Reduces annotation overhead by minimizing resource and time consumption through its tracking and management features.

Scientific Applications:

  • Biomedical Corpus Annotation: Facilitates creation of high-quality annotated corpora for biomedical text mining, including annotation of diseases, symptoms, and treatments.
  • Annotation Quality Assessment: Enables inter-annotator agreement analysis and iterative refinement to improve corpus reliability for downstream text mining applications.

Methodology:

Operates a backend infrastructure that supports iterative project management, systematic tracking of all annotation activities, and tools for quality control and inter-annotator agreement analysis.

Topics

Details

Tool Type:
desktop application
Operating Systems:
Linux, Windows, Mac
Added:
8/3/2017
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Annotation

Other operations do not define inputs or outputs.

Publications

Pérez-Pérez M, et al. Marky: a tool supporting annotation consistency in multi-user and iterative document annotation projects. Comput Methods Programs Biomed. 2015; 118:242-51. doi: 10.1016/j.cmpb.2014.11.005

PMID: 25480679

Documentation

Links