MartiniGlass

MartiniGlass facilitates visualization of molecular dynamics simulations performed with the Martini force field using the VMD package.

Key Features:

• Topology Processing: MartiniGlass rapidly processes molecular topologies for coarse-grained systems.
• Topological Feature Accounting: MartiniGlass accounts for important topological features at coarse-grained resolution, such as secondary structure restraints.
• Trajectory Preparation: MartiniGlass prepares topologies for easy visualization of simulated trajectories.

Scientific Applications:

• Coarse-Grained Molecular Dynamics Visualization: MartiniGlass enables visualization of systems simulated with the Martini force field, addressing the challenge of visualizing coarse-grained models.
• Cellular Process Modeling: MartiniGlass supports visualization of molecular models used to understand cellular processes.

Methodology:

MartiniGlass is implemented as a Python package that processes molecular topologies and accounts for topological features to prepare them for visualization in VMD.