Mashtree

Rapid comparison of whole-genome sequence files using Mash distances and construction of a neighbor-joining tree.

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Topics

Details

License:: GPL-3.0
Cost:: Free of charge
Tool Type:: command-line tool
Operating Systems:: Linux, Mac
Programming Languages:: Perl
Added:: 9/28/2026
Last Updated:: 9/28/2026

Operations

Data Inputs & Outputs

Phylogenetic inference (minimum distance methods)

Inputs

Nucleic acid sequence

Outputs

Publications

DOI: 10.21105/joss.01762

Documentation

General

https://github.com/lskatz/mashtree#readme

Main Mashtree documentation and usage examples.

Links

Issue tracker

https://github.com/lskatz/mashtree/issues

Repository

https://github.com/lskatz/mashtree

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