Matataki

Matataki reduces computational cost and accelerates reanalysis of RNA-Seq data by minimizing data decompression overhead to enable discovery of disease-associated genes and pathways.


Key Features:

  • Reduced Computational Cost: Optimizes the reanalysis workflow to lower computational resource requirements for large RNA-Seq datasets.
  • Improved Discovery Potential: Streamlines the analysis pipeline to enhance detection of disease-associated genes and pathways from RNA-Seq data.
  • Focus on Data Decompression: Addresses decompression of large sequenced datasets to reduce a primary bottleneck in RNA-Seq analyses.

Scientific Applications:

  • RNA-Seq reanalysis: Enables large-scale reanalysis of existing RNA-Seq datasets.
  • Disease gene and pathway discovery: Facilitates identification of disease-associated genes and pathways from transcriptomic data.
  • Genomic research and discovery: Supports genomic studies that require processing many sequenced datasets.

Methodology:

Optimizes RNA-Seq reanalysis by reducing data decompression overhead and streamlining the analysis pipeline.

Topics

Details

Tool Type:
command-line tool
Operating Systems:
Linux, Windows, Mac
Programming Languages:
C++
Added:
7/28/2018
Last Updated:
12/10/2018

Operations

Publications

Okamura Y, Kinoshita K. Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. BMC Bioinformatics. 2018;19(1). doi:10.1186/s12859-018-2279-y. PMID:30012088. PMCID:PMC6048772.

Funding: - Japan Society for the Promotion of Science: 15H02773

Documentation