Matataki
Matataki reduces computational cost and accelerates reanalysis of RNA-Seq data by minimizing data decompression overhead to enable discovery of disease-associated genes and pathways.
Key Features:
- Reduced Computational Cost: Optimizes the reanalysis workflow to lower computational resource requirements for large RNA-Seq datasets.
- Improved Discovery Potential: Streamlines the analysis pipeline to enhance detection of disease-associated genes and pathways from RNA-Seq data.
- Focus on Data Decompression: Addresses decompression of large sequenced datasets to reduce a primary bottleneck in RNA-Seq analyses.
Scientific Applications:
- RNA-Seq reanalysis: Enables large-scale reanalysis of existing RNA-Seq datasets.
- Disease gene and pathway discovery: Facilitates identification of disease-associated genes and pathways from transcriptomic data.
- Genomic research and discovery: Supports genomic studies that require processing many sequenced datasets.
Methodology:
Optimizes RNA-Seq reanalysis by reducing data decompression overhead and streamlining the analysis pipeline.
Topics
Details
- Tool Type:
- command-line tool
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- C++
- Added:
- 7/28/2018
- Last Updated:
- 12/10/2018
Operations
Publications
Okamura Y, Kinoshita K. Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data. BMC Bioinformatics. 2018;19(1). doi:10.1186/s12859-018-2279-y. PMID:30012088. PMCID:PMC6048772.
Funding: - Japan Society for the Promotion of Science: 15H02773