matcher-api (EBI)

Pairwise sequence alignment of DNA or protein sequences using Waterman-Eggert local alignment.

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Topics

Sequence analysis

Details

Tool Type:: api
Operating Systems:: Linux, Windows, Mac
Added:: 8/3/2015
Last Updated:: 12/10/2018

Operations

Pairwise sequence alignment

Data Inputs & Outputs

Pairwise sequence alignment

Inputs

Protein sequence
- Textual format

Outputs

Sequence similarity plot
- Matrix format

Publications

Waterman MS, Eggert M. A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons. Journal of Molecular Biology. 1987;197(4):723-728. doi:10.1016/0022-2836(87)90478-5.

DOI: 10.1016/0022-2836(87)90478-5

Documentation

General

http://www.ebi.ac.uk/Tools/webservices/services/psa/emboss_matcher_rest

Links

Software catalogue

https://www.biocatalogue.org/services/3140

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