matcher WS (husar)

Finds the best local alignments between two sequences. It compares two sequences looking for local sequence similarities using a rigorous algorithm.

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Topics

Sequence analysis

Details

Tool Type:: api
Added:: 8/3/2015
Last Updated:: 12/10/2018

Operations

Sequence analysis

Data Inputs & Outputs

Sequence analysis

Inputs

Text data
- Textual format

Outputs

Database search results
- PDF
- PNG

Publications

Huang X, Miller W. A time-efficient, linear-space local similarity algorithm. Advances in Applied Mathematics. 1991;12(3):337-357. doi:10.1016/0196-8858(91)90017-d.

DOI: 10.1016/0196-8858(91)90017-D

Documentation

General

http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/matcher.html

Links

Software catalogue

https://www.biocatalogue.org/services/3652

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