matFR
matFR implements 42 feature-ranking methods in MATLAB to identify informative and discriminative features from large biological and clinical datasets for applications such as precision medicine.
Key Features:
- Integration of Methods: Incorporates 42 diverse feature ranking methods, including 12 from FSLib, 9 mutual information-based methods, and 7 native MATLAB functions such as "rankfeatures", "relieff", and "lasso".
- Supervised vs. Unsupervised Methods: Provides 29 supervised and 13 unsupervised feature ranking methods.
- Theoretical Categorization: Implements method categories including 12 mutual information-based methods, 8 statistical analysis-based methods, and 8 structure learning-based methods.
Scientific Applications:
- Precision Medicine: Enables ranking of features to identify candidate biomarkers and characteristics relevant to diagnosis, prognosis, and treatment strategies.
- Data Interpretation: Facilitates comparison, investigation, and interpretation of selected features across datasets to aid understanding of complex biological and clinical data.
- Medical Imaging: Has been applied to sorting mammographic breast lesion features, demonstrating utility in medical imaging and diagnostics.
Methodology:
The integrated methods apply principles such as mutual information, statistical analysis, and structure clustering to estimate feature importance within specific measure spaces.
Topics
Details
- Tool Type:
- library
- Programming Languages:
- MATLAB
- Added:
- 1/18/2021
- Last Updated:
- 2/20/2021
Operations
Publications
Zhang Z, Liang X, Qin W, Yu S, Xie Y. matFR: a MATLAB toolbox for feature ranking. Bioinformatics. 2020;36(19):4968-4969. doi:10.1093/bioinformatics/btaa621. PMID:32637981.
PMID: 32637981
Funding: - Shenzhen Matching Project: GJHS20170314155751703
- National Key Research and Develop Program of China: 2016YFC0105102
- National Natural Science Foundation of China: 61871374
- Leading Talent of Special Support Project in Guangdong: 2016TX03R139
- Science Foundation of Guangdong: 2015B02023301, 2017B020229002