MBRole

MBRole performs functional enrichment analysis of chemical compound lists from metabolomics experiments to interpret metabolites' biological roles and associated pathways.


Key Features:

  • Functional enrichment analysis: Performs enrichment analysis on lists of chemical compounds obtained from metabolomics experiments to relate metabolites to biological terms and pathways.
  • Expanded database integration: MBROLE2 incorporates 10 additional databases and broader vocabularies, including metabolite-protein and drug-protein interaction annotations.
  • Automatic identifier conversion: Automatically converts compound identifiers from multiple databases to enable integrated analysis across resources.

Scientific Applications:

  • Metabolomics interpretation: Interprets compound lists from metabolomics studies to elucidate the biological roles of specific metabolites.
  • Pathway and interaction analysis: Links metabolites to biological pathways and to metabolite-protein and drug-protein interactions for mechanistic insight.
  • Systems biology, pharmacology, and personalized medicine: Supports analyses relevant to systems biology, pharmacology, and personalized medicine by providing functional context for metabolites.

Methodology:

Performs functional enrichment analysis on input compound lists and converts compound identifiers using integrated databases (including the 10 additional databases in MBROLE2).

Topics

Details

Tool Type:
api
Operating Systems:
Linux, Windows, Mac
Added:
8/3/2017
Last Updated:
11/25/2024

Operations

Publications

López-Ibáñez J, Pazos F, Chagoyen M. MBROLE 2.0—functional enrichment of chemical compounds. Nucleic Acids Research. 2016;44(W1):W201-W204. doi:10.1093/nar/gkw253. PMID:27084944. PMCID:PMC4987872.

Documentation

Links