MBRole
MBRole performs functional enrichment analysis of chemical compound lists from metabolomics experiments to interpret metabolites' biological roles and associated pathways.
Key Features:
- Functional enrichment analysis: Performs enrichment analysis on lists of chemical compounds obtained from metabolomics experiments to relate metabolites to biological terms and pathways.
- Expanded database integration: MBROLE2 incorporates 10 additional databases and broader vocabularies, including metabolite-protein and drug-protein interaction annotations.
- Automatic identifier conversion: Automatically converts compound identifiers from multiple databases to enable integrated analysis across resources.
Scientific Applications:
- Metabolomics interpretation: Interprets compound lists from metabolomics studies to elucidate the biological roles of specific metabolites.
- Pathway and interaction analysis: Links metabolites to biological pathways and to metabolite-protein and drug-protein interactions for mechanistic insight.
- Systems biology, pharmacology, and personalized medicine: Supports analyses relevant to systems biology, pharmacology, and personalized medicine by providing functional context for metabolites.
Methodology:
Performs functional enrichment analysis on input compound lists and converts compound identifiers using integrated databases (including the 10 additional databases in MBROLE2).
Topics
Details
- Tool Type:
- api
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 8/3/2017
- Last Updated:
- 11/25/2024
Operations
Publications
López-Ibáñez J, Pazos F, Chagoyen M. MBROLE 2.0—functional enrichment of chemical compounds. Nucleic Acids Research. 2016;44(W1):W201-W204. doi:10.1093/nar/gkw253. PMID:27084944. PMCID:PMC4987872.
Documentation
User manual
http://csbg.cnb.csic.es/mbrole2/help.php