MDT

It prepares a raw frequency table, given information from MODELLER alignments and/or PDB files. The sample for generating the frequencies N is obtained depending on the type of features a, b, c, …, d. The sample can contain individual proteins, pairs of proteins, pairs of residues in proteins, pairs of aligned residues, pairs of aligned pairs of residues, chemical bonds, angles, dihedral angles, and pairs of tuples of atoms.