MeasurementError.cor

MeasurementError.cor estimates correlations while accounting for measurement error to reduce bias in high-throughput genomic and molecular biology data analyses.


Key Features:

  • Two-Stage Measurement Error Model: Implements a two-stage approach that models measurement error explicitly to adjust correlation estimates.
  • Reduced Bias: Produces correlation estimates with lower bias compared to conventional sample correlation by accounting for measurement inaccuracies.
  • Bioconductor/R Integration: Implemented in R and distributed within the Bioconductor ecosystem to enable interoperability with other genomics and molecular biology analysis packages.

Scientific Applications:

  • Genomic Data Analysis: Improves reliability of correlation studies involving gene expression and other high-throughput genomic datasets.
  • Molecular Biology Research: Supports experiments that require precise statistical evaluation of associations affected by measurement error.

Methodology:

Implements a two-stage measurement error model to adjust correlation estimates for measurement inaccuracies, implemented in R within the Bioconductor framework.

Topics

Collections

Details

License:
GPL-3.0
Tool Type:
command-line tool, library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
R
Added:
1/17/2017
Last Updated:
11/25/2024

Operations

Publications

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Orchestrating high-throughput genomic analysis with Bioconductor. Nature Methods. 2015;12(2):115-121. doi:10.1038/nmeth.3252. PMID:25633503. PMCID:PMC4509590.

Documentation

Downloads