MedlineRanker
MedlineRanker ranks Medline abstracts for user-defined biomedical topics by identifying discriminative words from a provided set of abstracts and scoring other abstracts to prioritize relevant literature.
Key Features:
- Automated Discriminative Word Identification: Identifies words significantly enriched in a user-provided set of Medline abstracts compared to a random sample from the Medline database.
- Relevance Scoring and Ranking: Scores and ranks other Medline abstracts based on the presence and weights of the identified discriminative words.
- Inclusion of Recent Publications: Ranks recent publications that have not yet been indexed with specific keywords to surface emerging research.
- Efficiency and Scalability: Processes and ranks millions of Medline abstracts to support large-scale literature retrieval.
Scientific Applications:
- Systematic reviews: Prioritizes relevant Medline abstracts to support literature selection in systematic reviews.
- Meta-analyses: Facilitates identification of candidate studies for inclusion in meta-analyses by ranking relevant abstracts.
- Hypothesis generation: Supports exploratory research and hypothesis generation by highlighting topic-relevant literature.
- Literature surveillance: Enables detection of recent developments and trends by ranking publications not yet indexed with keywords.
Methodology:
Text-mining extracts and analyzes key terms from a user-provided set of abstracts, compares term frequencies against a broader Medline corpus to identify discriminative words, and uses those words to score and rank other Medline abstracts.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- R, Perl
- Added:
- 2/14/2017
- Last Updated:
- 11/25/2024
Operations
Publications
Fontaine J, Barbosa-Silva A, Schaefer M, Huska MR, Muro EM, Andrade-Navarro MA. MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Research. 2009;37(suppl_2):W141-W146. doi:10.1093/nar/gkp353. PMID:19429696. PMCID:PMC2703945.