MedTator
MedTator facilitates creation of high-quality annotation corpora for biomedical and clinical text by supporting document annotation, corpus summarization, annotation export, and annotation adjudication.
Key Features:
- Document annotation: Enables manual annotation of biomedical and clinical documents.
- Corpus summarization: Produces summaries and metadata for annotated corpora.
- Annotation export: Exports annotations for downstream analysis and corpus development.
- Annotation adjudication: Provides adjudication capabilities to reconcile annotator disagreements and produce consensus annotations.
- Serverless implementation: Implements client-side/serverless operation using HTML5 and open-source packages.
Scientific Applications:
- Corpus development for biomedical and clinical research: Supports creation and management of annotated corpora used in biomedical and clinical studies.
- Adjudication and quality control: Enables reconciliation of annotator differences to produce gold-standard corpora for downstream analysis.
Methodology:
Built using HTML5 techniques and leveraging open-source packages to provide serverless (client-side) text annotation.
Topics
Details
- License:
- Apache-2.0
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Linux, Windows
- Programming Languages:
- JavaScript
- Added:
- 6/20/2022
- Last Updated:
- 11/24/2024
Operations
Publications
He H, Fu S, Wang L, Liu S, Wen A, Liu H. MedTator: a serverless annotation tool for corpus development. Bioinformatics. 2022;38(6):1776-1778. doi:10.1093/bioinformatics/btab880. PMID:34983060. PMCID:PMC10060696.
Documentation
User manual', 'General
https://github.com/OHNLP/MedTator/wiki/Links
Repository
https://github.com/OHNLP/MedTator