MendelIHT.jl

Implements iterative hard thresholding as a multiple regression model for GWAS. Built-in support for handling PLINK and VCF files, parallel computing, fits a variety of GLM models, and handles group/weighting SNPs.
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Topics

Data miningGenetics

Details

License:
MIT
Maturity:
Mature
Cost:
Free of charge
Tool Type:
library
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Julia
Added:
4/12/2020
Last Updated:
4/22/2021

Operations

Documentation

API documentation
https://openmendel.github.io/MendelIHT.jl/latest/

Downloads

  • API specification
    Version: Julia 1.0-1.3
    https://github.com/OpenMendel/MendelIHT.jl
    Start Julia, press ] to enter package manager mode, and type the following (after pkg>): (v1.0) pkg> add https://github.com/OpenMendel/SnpArrays.jl (v1.0) pkg> add https://github.com/OpenMendel/MendelSearch.jl (v1.0) pkg> add https://github.com/OpenMendel/MendelBase.jl (v1.0) pkg> add https://github.com/OpenMendel/MendelIHT.jl
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