Mendel,MD

Mendel,MD identifies disease-causing variants from human exome and genome sequencing data to support diagnosis of Mendelian disorders.


Key Features:

  • Comprehensive Filtering Options: Integrates multiple variant- and gene-level filters to refine candidate genes and variants from exome and genome sequencing data.
  • Regular Database Updates: Annotates exome and genome data using regularly updated databases to maintain current gene–disease associations.
  • 1-Click Methodology: Implements a "1-click" method that lists variants in genes present in OMIM for rapid candidate review.

Scientific Applications:

  • Diagnosis of Mendelian Disorders: Prioritizes and identifies candidate disease-causing variants for patients with suspected Mendelian disorders using exome or genome data.
  • Clinical Variant Interpretation: Facilitates identification and review of mutations reported in clinical cases and the literature to support diagnostic interpretation.

Methodology:

Applies integrated variant- and gene-level filtering, annotation with regularly updated databases, and a "1-click" OMIM-based variant listing.

Topics

Details

Maturity:
Mature
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
6/19/2018
Last Updated:
6/16/2020

Operations

Publications

G. C. C. L. Cardenas R, D. Linhares N, L. Ferreira R, Pena SDJ. Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders. PLOS Computational Biology. 2017;13(6):e1005520. doi:10.1371/journal.pcbi.1005520. PMID:28594829. PMCID:PMC5464533.

Documentation