Mendel,MD
Mendel,MD identifies disease-causing variants from human exome and genome sequencing data to support diagnosis of Mendelian disorders.
Key Features:
- Comprehensive Filtering Options: Integrates multiple variant- and gene-level filters to refine candidate genes and variants from exome and genome sequencing data.
- Regular Database Updates: Annotates exome and genome data using regularly updated databases to maintain current gene–disease associations.
- 1-Click Methodology: Implements a "1-click" method that lists variants in genes present in OMIM for rapid candidate review.
Scientific Applications:
- Diagnosis of Mendelian Disorders: Prioritizes and identifies candidate disease-causing variants for patients with suspected Mendelian disorders using exome or genome data.
- Clinical Variant Interpretation: Facilitates identification and review of mutations reported in clinical cases and the literature to support diagnostic interpretation.
Methodology:
Applies integrated variant- and gene-level filtering, annotation with regularly updated databases, and a "1-click" OMIM-based variant listing.
Topics
Details
- Maturity:
- Mature
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 6/19/2018
- Last Updated:
- 6/16/2020
Operations
Publications
G. C. C. L. Cardenas R, D. Linhares N, L. Ferreira R, Pena SDJ. Mendel,MD: A user-friendly open-source web tool for analyzing WES and WGS in the diagnosis of patients with Mendelian disorders. PLOS Computational Biology. 2017;13(6):e1005520. doi:10.1371/journal.pcbi.1005520. PMID:28594829. PMCID:PMC5464533.