mergeslidingwindowsclusters

mergeslidingwindowsclusters merges two files containing outputs from sliding windows clustering analyses to consolidate results from high-throughput experiments such as next-generation DNA sequencing for integrated genomic analyses.


Key Features:

  • Integration Capability: Merges two distinct result files produced by sliding windows clustering analyses into a unified dataset.
  • Next-generation sequencing compatibility: Operates on outputs derived from high-throughput experiments including next-generation DNA sequencing (NGS).
  • Transparency and Reproducibility: Automatically tracks computational processes to enhance transparency and reproducibility of merged results.

Scientific Applications:

  • Sequence variation analysis: Combines sliding-window clustering results to analyze sequence variation across genomes.
  • Expression pattern analysis: Integrates clustering outputs to compare and consolidate expression pattern results across genomic regions.

Methodology:

Systematic integration of data files produced by sliding windows clustering algorithms, merging results from two input files.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Data handling

Inputs

Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links