mergeslidingwindowsclusters

mergeslidingwindowsclusters merges two files containing outputs from sliding windows clustering analyses to consolidate results from high-throughput experiments such as next-generation DNA sequencing for integrated genomic analyses.


Key Features:

  • Integration Capability: Merges two distinct result files produced by sliding windows clustering analyses into a unified dataset.
  • Next-generation sequencing compatibility: Operates on outputs derived from high-throughput experiments including next-generation DNA sequencing (NGS).
  • Transparency and Reproducibility: Automatically tracks computational processes to enhance transparency and reproducibility of merged results.

Scientific Applications:

  • Sequence variation analysis: Combines sliding-window clustering results to analyze sequence variation across genomes.
  • Expression pattern analysis: Integrates clustering outputs to compare and consolidate expression pattern results across genomic regions.

Methodology:

Systematic integration of data files produced by sliding windows clustering algorithms, merging results from two input files.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links