mergetranscriptlists
mergetranscriptlists merges two lists of genomic coordinates to integrate genomic datasets for comparative and combined analyses of data produced by next-generation DNA sequencing.
Key Features:
- Data Integration: Merges two lists containing genomic coordinates to combine datasets from different experiments or sources.
- Reproducibility and Transparency: Supports reproducible and transparent analyses via integration with the Galaxy framework.
- Scalability: Designed to handle large-scale genomic datasets generated by next-generation DNA sequencing.
Scientific Applications:
- Comparative Genomics: Enables comparison of genomic coordinate sets across different conditions or species.
- Multi-experiment Integration: Facilitates integration of data from multiple sequencing experiments to strengthen findings.
- Meta-analysis: Supports combining datasets from disparate sources for meta-analyses.
Methodology:
Runs within the Galaxy framework and merges two lists of genomic coordinates according to specified parameters.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.