mergetranscriptlists

mergetranscriptlists merges two lists of genomic coordinates to integrate genomic datasets for comparative and combined analyses of data produced by next-generation DNA sequencing.


Key Features:

  • Data Integration: Merges two lists containing genomic coordinates to combine datasets from different experiments or sources.
  • Reproducibility and Transparency: Supports reproducible and transparent analyses via integration with the Galaxy framework.
  • Scalability: Designed to handle large-scale genomic datasets generated by next-generation DNA sequencing.

Scientific Applications:

  • Comparative Genomics: Enables comparison of genomic coordinate sets across different conditions or species.
  • Multi-experiment Integration: Facilitates integration of data from multiple sequencing experiments to strengthen findings.
  • Meta-analysis: Supports combining datasets from disparate sources for meta-analyses.

Methodology:

Runs within the Galaxy framework and merges two lists of genomic coordinates according to specified parameters.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Data handling

Publications

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Documentation

Links