mergingdataclusterize
mergingdataclusterize clusters sequencing reads by identifying overlapping genomic intervals to organize and analyze high-throughput genomic data.
Key Features:
- Read Clusterization: Identifies and groups reads that share overlapping genomic regions, supporting detection of structural variations and repetitive elements.
- Integration with Galaxy Project: Operates within the Galaxy framework.
Scientific Applications:
- Biomedical Research: Supports large-scale genomic analyses of datasets generated by next-generation sequencing technologies.
- Data Accessibility and Reproducibility: Enables transparent and reproducible computational analyses when run within the Galaxy framework.
Methodology:
Identifies and groups overlapping reads based on genomic intervals and utilizes statistical and computational methods to manage and analyze genomic data.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Clustering
Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.