mergingdataclusterize

mergingdataclusterize clusters sequencing reads by identifying overlapping genomic intervals to organize and analyze high-throughput genomic data.


Key Features:

  • Read Clusterization: Identifies and groups reads that share overlapping genomic regions, supporting detection of structural variations and repetitive elements.
  • Integration with Galaxy Project: Operates within the Galaxy framework.

Scientific Applications:

  • Biomedical Research: Supports large-scale genomic analyses of datasets generated by next-generation sequencing technologies.
  • Data Accessibility and Reproducibility: Enables transparent and reproducible computational analyses when run within the Galaxy framework.

Methodology:

Identifies and groups overlapping reads based on genomic intervals and utilizes statistical and computational methods to manage and analyze genomic data.

Topics

Collections

Details

Maturity:
Mature
Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Added:
12/19/2016
Last Updated:
11/25/2024

Operations

Data Inputs & Outputs

Publications

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.

Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.

Documentation

Links