mergingdataclusterize
mergingdataclusterize clusters sequencing reads by identifying overlapping genomic intervals to organize and analyze high-throughput genomic data.
Key Features:
- Read Clusterization: Identifies and groups reads that share overlapping genomic regions, supporting detection of structural variations and repetitive elements.
- Integration with Galaxy Project: Operates within the Galaxy framework.
Scientific Applications:
- Biomedical Research: Supports large-scale genomic analyses of datasets generated by next-generation sequencing technologies.
- Data Accessibility and Reproducibility: Enables transparent and reproducible computational analyses when run within the Galaxy framework.
Methodology:
Identifies and groups overlapping reads based on genomic intervals and utilizes statistical and computational methods to manage and analyze genomic data.
Topics
Collections
Details
- Maturity:
- Mature
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Added:
- 12/19/2016
- Last Updated:
- 11/25/2024
Operations
Data Inputs & Outputs
Publications
Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. Nucleic Acids Research. 2016;44(W1):W3-W10. doi:10.1093/nar/gkw343. PMID:27137889. PMCID:PMC4987906.
Mareuil F, Doppelt-Azeroual O, Ménager H. A public Galaxy platform at Pasteur used as an execution engine for web services. Unknown Journal. 2017. doi:10.7490/f1000research.1114334.1.