MetaboLink

MetaboLink processes and standardizes large-scale untargeted LC-MS metabolomics data for downstream statistical analysis and clustering.


Key Features:

  • Streamlined Workflow: Integrates established methodologies for processing LC-MS metabolomics datasets and automates correction, filtration, imputation, and normalization steps.
  • Data Visualization: Provides robust visualization options to facilitate interpretation of metabolomics data.
  • Statistical Testing Interface: Includes an interface for conducting statistical tests on processed metabolomics data.
  • PolySTest Integration: Enables further statistical testing through integration with PolySTest.
  • VSClust Integration: Integrates VSClust to perform clustering analysis and identify patterns in metabolomics data.

Scientific Applications:

  • Large-scale untargeted metabolomics: Supports processing and post-processing of large-scale untargeted LC-MS metabolomics datasets.
  • Biomarker discovery: Facilitates biomarker discovery by providing standardized preprocessing and statistical testing workflows.
  • Metabolic pathway analysis: Supplies normalized and filtered metabolite data suitable for metabolic pathway analysis.
  • Systems biology: Enables systems biology studies by combining preprocessing, statistical testing, and clustering analyses.

Methodology:

Automated correction, filtration, imputation, and normalization of LC-MS metabolomics data, with integration of PolySTest for statistical testing and VSClust for clustering analysis.

Topics

Details

License:
MIT
Maturity:
Emerging
Cost:
Free of charge
Tool Type:
web application
Operating Systems:
Mac, Windows, Linux
Programming Languages:
R
Added:
7/21/2025
Last Updated:
10/3/2025

Operations

Publications

Mendes A, Havelund JF, Lemvig J, Schwämmle V, Færgeman NJ. MetaboLink: a web application for streamlined processing and analysis of large-scale untargeted metabolomics data. Bioinformatics. 2024;40(7). doi:10.1093/bioinformatics/btae459. PMID:39018180. PMCID:PMC11269424.

PMID: 39018180
Funding: - Independent Research Funds Denmark: 2032-00062B

Documentation

Links