MetaboLink
MetaboLink processes and standardizes large-scale untargeted LC-MS metabolomics data for downstream statistical analysis and clustering.
Key Features:
- Streamlined Workflow: Integrates established methodologies for processing LC-MS metabolomics datasets and automates correction, filtration, imputation, and normalization steps.
- Data Visualization: Provides robust visualization options to facilitate interpretation of metabolomics data.
- Statistical Testing Interface: Includes an interface for conducting statistical tests on processed metabolomics data.
- PolySTest Integration: Enables further statistical testing through integration with PolySTest.
- VSClust Integration: Integrates VSClust to perform clustering analysis and identify patterns in metabolomics data.
Scientific Applications:
- Large-scale untargeted metabolomics: Supports processing and post-processing of large-scale untargeted LC-MS metabolomics datasets.
- Biomarker discovery: Facilitates biomarker discovery by providing standardized preprocessing and statistical testing workflows.
- Metabolic pathway analysis: Supplies normalized and filtered metabolite data suitable for metabolic pathway analysis.
- Systems biology: Enables systems biology studies by combining preprocessing, statistical testing, and clustering analyses.
Methodology:
Automated correction, filtration, imputation, and normalization of LC-MS metabolomics data, with integration of PolySTest for statistical testing and VSClust for clustering analysis.
Topics
Details
- License:
- MIT
- Maturity:
- Emerging
- Cost:
- Free of charge
- Tool Type:
- web application
- Operating Systems:
- Mac, Windows, Linux
- Programming Languages:
- R
- Added:
- 7/21/2025
- Last Updated:
- 10/3/2025
Operations
Publications
Mendes A, Havelund JF, Lemvig J, Schwämmle V, Færgeman NJ. MetaboLink: a web application for streamlined processing and analysis of large-scale untargeted metabolomics data. Bioinformatics. 2024;40(7). doi:10.1093/bioinformatics/btae459. PMID:39018180. PMCID:PMC11269424.