metagWGS
metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
Topics
Details
- License:
- GPL-3.0
- Maturity:
- Emerging
- Cost:
- Free of charge (with restrictions)
- Tool Type:
- workflow
- Operating Systems:
- Linux
- Programming Languages:
- Python
- Added:
- 4/19/2022
- Last Updated:
- 9/16/2022
Operations
Data Inputs & Outputs
Gene functional annotation
De-novo assembly
Documentation
User manual
https://forgemia.inra.fr/genotoul-bioinfo/metagwgs/-/blob/master/README.mdWe provide up to date installation documentation, usage documentation, output description and functionnal test datasets and procedure.
Downloads
- Test datahttps://forgemia.inra.fr/genotoul-bioinfo/metagwgs-test-datasetsFunctional tests data and script
Links
Repository
https://forgemia.inra.fr/genotoul-bioinfo/metagwgs(See documentation, source code and functionnal test documentation.)