meTAline

metagenomics Taxonomic Assignation pipeline in Snakemake

Topics

Collections

Details

License:
GPL-3.0
Maturity:
Emerging
Tool Type:
workflow
Programming Languages:
Python, R
Added:
4/21/2022
Last Updated:
3/13/2023

Operations

Data Inputs & Outputs

Sequence trimming

Sequencing quality control

Genome indexing

Other operations do not define inputs or outputs.

Related Tools

bracken
Relation: uses
fastqc
Relation: uses
hisat2
Relation: uses
kraken2
Relation: uses
krakentools
Relation: uses
samtools
Relation: uses
snakemake
Relation: uses
trimmomatic
Relation: uses