MHC-NP
MHC-NP predicts peptides naturally processed by Major Histocompatibility Complex class I (MHC-I) molecules to identify naturally presented epitopes for immunological research.
Key Features:
- Predictive Accuracy: Predicts peptides eluted from human HLA-A*02:01, HLA-B*07:02, HLA-B*35:01, HLA-B*44:03, HLA-B*53:01, HLA-B*57:01 and mouse H2-D(b) and H2-K(b) MHC-I molecules.
- Machine Learning Integration: Employs machine learning techniques developed within a competitive immunological framework.
Scientific Applications:
- Immunology Research: Aids study of peptide–MHC interactions and immune response by predicting naturally processed ligands.
- Vaccine Development: Identifies potential vaccine targets by predicting peptides naturally presented by MHC-I molecules.
Methodology:
Based on a theoretical framework modeling peptide processing and presentation by MHC-I molecules and employing machine learning developed within a competitive immunological framework.
Topics
Details
- Tool Type:
- web application
- Operating Systems:
- Linux, Windows, Mac
- Programming Languages:
- Python
- Added:
- 8/3/2017
- Last Updated:
- 12/10/2018
Operations
Data Inputs & Outputs
Prediction and recognition
Publications
Giguère S, et al. MHC-NP: predicting peptides naturally processed by the MHC. J Immunol Methods. 2013; 400-401:30-6. doi: 10.1016/j.jim.2013.10.003
PMID: 24144535
Documentation
User manual
http://tools.immuneepitope.org/mhcnp/help/