MHC-NP

MHC-NP predicts peptides naturally processed by Major Histocompatibility Complex class I (MHC-I) molecules to identify naturally presented epitopes for immunological research.


Key Features:

  • Predictive Accuracy: Predicts peptides eluted from human HLA-A*02:01, HLA-B*07:02, HLA-B*35:01, HLA-B*44:03, HLA-B*53:01, HLA-B*57:01 and mouse H2-D(b) and H2-K(b) MHC-I molecules.
  • Machine Learning Integration: Employs machine learning techniques developed within a competitive immunological framework.

Scientific Applications:

  • Immunology Research: Aids study of peptide–MHC interactions and immune response by predicting naturally processed ligands.
  • Vaccine Development: Identifies potential vaccine targets by predicting peptides naturally presented by MHC-I molecules.

Methodology:

Based on a theoretical framework modeling peptide processing and presentation by MHC-I molecules and employing machine learning developed within a competitive immunological framework.

Topics

Details

Tool Type:
web application
Operating Systems:
Linux, Windows, Mac
Programming Languages:
Python
Added:
8/3/2017
Last Updated:
12/10/2018

Operations

Data Inputs & Outputs

Prediction and recognition

Publications

Giguère S, et al. MHC-NP: predicting peptides naturally processed by the MHC. J Immunol Methods. 2013; 400-401:30-6. doi: 10.1016/j.jim.2013.10.003

PMID: 24144535

Documentation

Links