MIA
MIA performs automated analysis of microscopic images using deep learning for segmentation, object detection, and classification to support quantitative biomedical image analysis.
Key Features:
- Deep learning algorithms: Implements state-of-the-art deep learning methods tailored for segmentation, object detection, and classification of microscopy images.
- Image labeling and model training: Provides workflows for image labeling and training of machine learning models on microscopy datasets.
- Model inference: Executes trained models to perform automated inference on new microscopy images.
- Performance validation: Was evaluated in a public competition and achieved top-three performance across tested datasets.
Scientific Applications:
- Biomedical microscopy image analysis: Enables quantitative segmentation, detection, and classification of microscopic structures in biomedical research.
- Benchmarking and validation: Supports method evaluation and benchmarking using public competition datasets.
Methodology:
Employs image labeling, model training, and model inference using deep learning algorithms specialized for segmentation, object detection, and classification; performance was assessed in a public competition.
Topics
Details
- License:
- GPL-3.0
- Cost:
- Free of charge
- Tool Type:
- desktop application
- Operating Systems:
- Linux, Mac, Windows
- Programming Languages:
- Python
- Added:
- 9/17/2022
- Last Updated:
- 11/24/2024
Operations
Publications
Körber N. MIA: An Open Source Standalone Deep Learning Application for Microscopic Image Analysis. Unknown Journal. 2022. doi:10.1101/2022.01.14.476308.
Documentation
General', 'User manual', 'Quick start guide
https://mianalyzer.github.io